Index

A

add_covariate_to_nhoods_var() (TrajAtlas.TrajDiff.Tdiff method) add_nhood_expression() (TrajAtlas.TrajDiff.Tdiff method)

annotate_nhoods() (TrajAtlas.TrajDiff.Tdiff method) annotate_nhoods_continuous() (TrajAtlas.TrajDiff.Tdiff method) attrTTest() (in module TrajAtlas.utils)

B

build_nhood_graph() (TrajAtlas.TrajDiff.Tdiff method)

C

count_nhoods() (TrajAtlas.TrajDiff.Tdiff method)

D

da() (TrajAtlas.TrajDiff.Tdiff method) da_expression() (TrajAtlas.TrajDiff.Tdiff method)

da_expression_overall() (TrajAtlas.TrajDiff.Tdiff method) de() (TrajAtlas.TrajDiff.Tdiff method)

F

find_gene_module() (in module TrajAtlas.TRAVMap)

G

getAttributeBase() (in module TrajAtlas.utils)

getAttributeGEP() (in module TrajAtlas.utils) getTrajExpression() (in module TrajAtlas.TRAVMap)

L

label_transfer() (in module TrajAtlas.model)

load() (TrajAtlas.TrajDiff.Tdiff method)

M

make_nhoods() (TrajAtlas.TrajDiff.Tdiff method) make_pseudobulk_parallel() (TrajAtlas.TrajDiff.Tdiff method) make_single_cpm() (TrajAtlas.TrajDiff.Tdiff method) make_whole_cpm() (TrajAtlas.TrajDiff.Tdiff method) module TrajAtlas TrajAtlas.model TrajAtlas.TrajDiff TrajAtlas.TRAVMap TrajAtlas.utils

P

permute_point_cpm() (TrajAtlas.TrajDiff.Tdiff method) permute_point_cpm_parallel() (TrajAtlas.TrajDiff.Tdiff method) plotDAheatmap() (TrajAtlas.TrajDiff.Tdiff method)

plotDE() (TrajAtlas.TrajDiff.Tdiff method) plotGeneModule() (in module TrajAtlas.TRAVMap) ProjectData() (in module TrajAtlas.model) pseduo_predict() (in module TrajAtlas.model)

S

split_gene() (in module TrajAtlas.TrajDiff)

T

Tdiff (class in TrajAtlas.TrajDiff) TrajAtlas module TrajAtlas.model module

TrajAtlas.TrajDiff module TrajAtlas.TRAVMap module TrajAtlas.utils module