TrajAtlas.model.pseduo_predict

TrajAtlas.model.pseduo_predict(adata, modelPath='Default')

Predict common pseudotime.

See also

• See Projecting Osteogenic Datasets onto Differentiation Atlas and OPCST Model Using TrajAtlas for how to

projecting OPCST model to your datasets.

Parameters:

• adata (AnnData) – Annotated data object.

• modelPath (str) – Path of model to predict pseudotime. The default model loaded was trained with Differentiation Atlas by LightGBMRegressor.

Returns:

: adata object. Also updates adata.obs with the following: