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TrajAtlas 0.1 documentation
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General

  • Installation
  • Tutorials
    • Projecting Osteogenic Datasets onto Differentiation Atlas and OPCST Model Using TrajAtlas
    • Differential Abundance with TrajAtlas
    • Differential Expression with TrajAtlas
    • Detect pseudotemporal gene modules with TRAVMap
    • TrajAtlas Meets Gene Expression Patterns
    • TrajAtlas meets Spatial Omic
    • TrajAtlas meets Gene Set Scoring
  • API
    • Model
      • TrajAtlas.model.ProjectData
      • TrajAtlas.model.label_transfer
      • TrajAtlas.model.pseduo_predict
    • TDiff
      • TrajAtlas.TrajDiff.Tdiff
      • TrajAtlas.TrajDiff.split_gene
    • TRAVMap
      • TrajAtlas.TRAVMap.getTrajExpression
      • TrajAtlas.TRAVMap.find_gene_module
      • TrajAtlas.TRAVMap.plotGeneModule
    • utils
      • TrajAtlas.utils.getAttributeGEP
      • TrajAtlas.utils.getAttributeBase
      • TrajAtlas.utils.attrTTest
  • Release Notes
    • TrajAtlas 0.2.0
    • TrajAtlas 0.1.0
  • Contributing Guide
  • References

About

  • About TrajAtlas
    • Introduction to TrajAtlas
    • Differentiation Atlas
    • OPCST model
    • TrajDiff
    • TRAVMap
  • Team
  • Citing TrajAtlas
  • GitHub
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Team#

The TrajAtlas project was developed in the Zhanglab at Wuhan University. We greatly appreciate every code contribution we have received thus far. If you are interested in participating in this project, please check out the Contributing Guide or contact us at GilbertHan1011@gmail.com.

Principal Investigators#

Yufeng Zhang
  • Google Scholar

Huan Liu
  • Google Scholar

  • Badgerliu

Core Development Team#

Litian Han
  • Google Scholar

  • GilbertHan

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