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TrajAtlas 0.1 documentation
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General

  • Installation
  • Tutorials
    • Projecting Osteogenic Datasets onto Differentiation Atlas and OPCST Model Using TrajAtlas
    • Differential Abundance with TrajAtlas
    • Differential Expression with TrajAtlas
    • Detect pseudotemporal gene modules with TRAVMap
    • TrajAtlas Meets Gene Expression Patterns
    • TrajAtlas meets Spatial Omic
    • TrajAtlas meets Gene Set Scoring
  • API
    • Model
      • TrajAtlas.model.ProjectData
      • TrajAtlas.model.label_transfer
      • TrajAtlas.model.pseduo_predict
    • TDiff
      • TrajAtlas.TrajDiff.Tdiff
      • TrajAtlas.TrajDiff.split_gene
    • TRAVMap
      • TrajAtlas.TRAVMap.getTrajExpression
      • TrajAtlas.TRAVMap.find_gene_module
      • TrajAtlas.TRAVMap.plotGeneModule
    • utils
      • TrajAtlas.utils.getAttributeGEP
      • TrajAtlas.utils.getAttributeBase
      • TrajAtlas.utils.attrTTest
  • Release Notes
    • TrajAtlas 0.2.0
    • TrajAtlas 0.1.0
  • Contributing Guide
  • References

About

  • About TrajAtlas
    • Introduction to TrajAtlas
    • Differentiation Atlas
    • OPCST model
    • TrajDiff
    • TRAVMap
  • Team
  • Citing TrajAtlas
  • GitHub
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