API#

Import TrajAtlas as:

import TrajAtlas as tja

TrajAtlas has a modular API, organized around multiple modules

  • TrajAtlas.model projected osteogensis datasets to Differentiation Atas and OPCST model to reconstructed osteoblast differentiation.

  • TrajAtlas.TrajDiff provided stastic framework to detect differential pseudotime abundance and differential gene expressions.

  • TrajAtlas.TRAVMap utilized NMF to detect pseudotemporal gene modules.

  • TrajAtlas.utils provided other useful functions.

API